Moutta Farm
Practical guideEM micro-organisms

How do EM work? Fermentation, competition and the limits of the dominance principle

Homemade fermented foods: sauerkraut, gherkins, kefir, sourdough bread and lacto-fermented vegetables

A peeling forgotten in a sealed bag can end up in one of two ways: it rots and smells dreadful, or it ferments and takes on a sour smell, rather like sauerkraut. The whole logic of effective microorganisms (EM) lies in this difference: steering organic matter towards fermentation rather than putrefaction.

This guide explains what really happens, what we know about the various microorganisms in the mix, and why the famous "dominance principle" promoted by the manufacturer should be read with caution.

Fermentation and putrefaction: two fates for organic matter

Cabbage fermenting on the left, cabbage rotting on the right

When oxygen is lacking, organic matter is transformed by microorganisms that don't need air. Depending on which ones gain the upper hand, the result is very different:

  • Putrefaction mainly breaks down proteins. It releases ammonia, sulphur compounds (the rotten-egg smell) and amines that smell of carrion. The material turns slimy, and the smell attracts flies.
  • Fermentation attacks sugars and starch first. It produces acids (lactic, acetic), a little alcohol and carbon dioxide. The material keeps its shape, smells sour or vinegary, and keeps well.

This is nothing new. Sauerkraut, kimchi, olives, cured sausage and farmers' silage all rely on the same principle. What EM offer is a way of applying this age-old know-how to kitchen waste, manure, animal bedding or compost. For the specific case of the bucket, see how bokashi fermentation works.

The role of lactic acid bacteria: acidifying to preserve

Homemade sauerkraut and a pH test strip: lactic fermentation makes the environment acidic

Lactic acid bacteria are the real workhorses of EM. They consume sugars and give off lactic acid. The environment quickly becomes acidic: a successfully activated EM has a pH of 3.2 to 3.6, and the EM-1 stock solution is in the same range.

Most putrefying bacteria grow poorly in such an acidic, airless environment. This is exactly what happens in a well-sealed silo: the pH drops, the material is "locked" and keeps for months. This mechanism has long been established, it is used throughout the food industry, and there is nothing specific to EM about it.

Two conditions are essential for it to work:

  • Sugar to feed the lactic acid bacteria. That is the role of the molasses in EM-1 and in fermented bran.
  • Little or no air. Hence the importance of pressing down, sealing and avoiding opening it constantly.
Key points

The most robust effect of EM is simple: acidifying organic matter away from air, so that it ferments instead of rotting. Anything that encourages acidification (sugars, no air, mild warmth) encourages a good result.

Yeasts and photosynthetic bacteria: what they are credited with

Yeasts

Yeasts under the microscope, budding and producing gas

Yeasts turn sugars into alcohol and carbon dioxide. They are what makes a container of EM swell during activation, and they contribute to the fruity, slightly alcoholic smell of a good ferment. Their presence in EM products is confirmed by analyses.

Photosynthetic bacteria

Purple photosynthetic bacteria seen under the microscope

The manufacturer presents them as the key to the mix: they are said to use light and heat to turn waste and foul-smelling gases into substances useful to plants. In nature, these purple bacteria certainly exist and have a very versatile metabolism.

The real question is whether they are present and active in the finished product, a highly acidic liquid kept in the dark. A DNA analysis published in 2024 found none in the solution tested, and other analyses show that they are, at best, a very small minority. Their actual role in everyday use therefore remains unknown.

The "dominance principle": what Higa says, what science says

The manufacturer's theory

According to Professor Teruo Higa, the microorganisms in any environment fall into three groups: a small minority of "regenerative" ones, a small minority of "degenerative" ones, and a large majority of "opportunists" that side with whichever group is dominant. Applying EM regularly would tip the opportunists onto the right side, in soil, water or air.

It is a vivid image, but it remains a theory. The proportions given actually vary between the manufacturer's documents, which clearly shows that they are not measurements. No independent study has validated this classification, and Higa himself acknowledged the difficulty of obtaining reproducible results.

What is actually observed

Current knowledge allows us to distinguish two situations:

  • In a closed, fresh, sugar-rich environment (bokashi bucket, silo, activation container), a massive input of lactic acid bacteria does indeed get ahead of the others. This is known as the priority effect or competitive exclusion: the first to settle consume the sugars, acidify and take up the space. Here, the idea of "dominance" has a real basis.
  • In an open environment that is already densely populated, such as garden soil, the opposite is true. A dose of EM adds a tiny quantity of microorganisms compared with the billions already present in every handful of soil. In a trial published in 2024, virtually no trace of the EM microorganisms could be found in the soil one week after application at the recommended dose; even at a dose a hundred times higher, they remained below 1% of the population. At the normal dose, the trial measured no effect. At a very high dose, soil activity rose briefly, but just as much with sterilised EM: the effect came from the added sugars, not from the living microbes.

Other trials, including a four-year field trial in Switzerland, compared live EM with sterilised EM: both gave the same results. In other words, what is attributed to the microbes often comes from what accompanies them (molasses, bran, bokashi). We go into these studies in detail in the guide what science says about EM.

Did you know?

The principle that works best was known long before EM: it is the principle of silage. Inoculating fresh, sugary, airless material with lactic acid bacteria is a standard, well-studied and well-mastered farming practice.

Why the effect depends on the context

The most cautious public assessments consider an effect of EM plausible mainly for composting, silage and manure treatment, provided that temperature, moisture and nutrient supply are controlled. In practice, four factors make the difference:

  • The substrate. Without sugars or fresh material, lactic acid bacteria have nothing to ferment.
  • Air. Lactic fermentation needs a closed, compacted environment. In an aerated compost heap, other microorganisms do the work.
  • Temperature. Below about 15 °C, everything slows down, and frost kills microorganisms. To activate a solution, manufacturers aim for 25 to 30 °C.
  • Moisture. Too dry and nothing happens; waterlogged and the material may rot despite the EM.
Emy's tip

If a ferment disappoints, don't double the dose: first check that there is sugar, little air, a mild temperature and material that is just moist. Correct these four points, then try again.

Gradual effects: from a few minutes to a few years

The effects of applying EM to soil can be seen within a few weeks, a few months and then from one season to the next

The manufacturer sums up the speed of action as follows: a few minutes for a bad smell, sometimes several years for soil fertility. Here is what can be taken from this:

  • Odours: an acidic solution sprayed on animal bedding or a bin quickly limits the release of ammonia. This is a plausible effect linked to acidity, and in a trial on dry toilets, sauerkraut juice did just as well as EM.
  • Fermentation of a bucket or silo: a few days to a few weeks, depending on temperature.
  • Soil: long-term trials in temperate climates have shown no specific effect of the microorganisms on yields or soil life. What improves a soil is first and foremost the regular addition of organic matter, whether fermented or composted.

To put these principles into practice, start with a well-prepared solution: our guide activating EM-1 step by step explains how to get a successful ferment, or you can start with Microferm EM-A, which is already activated. In the garden, the area where EM make the most sense is managing organic matter: see speeding up your compost with EM.

In summary

EM work above all through lactic fermentation: their bacteria consume sugars, acidify the environment and, away from air, stop organic matter from rotting. This mechanism is robust and has been known for centuries. The manufacturer's "dominance principle", on the other hand, has not been proven: it makes sense in a closed, sugary environment such as a bucket or silo, much less so in open soil already rich in life, where trials attribute the observed effects to the organic matter added. EM therefore give their best results where the substrate, air, temperature and moisture are under control.

https://www.mouttafarm.co.uk/guide/how-effective-microorganisms-work
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